Question 2: Assuming Villain calls our 3-bet with the entire range given in question 1, how often does he hit top pair or better on a flop of Q94r, assuming the queen is not the same suit as our A9s?

Bare in mind, Spoon said that the Queen on the flop was not the same suit as the A9 in our hand. (He said that in mIRC, it's your own fault for not knowing that.)

Total Combo's villain could have pre/post flop:
post/pre--TT+ AQs+ AK
pre---------27----6-------9
post--------24----5-------9--Total of 38

Hand combos that could have hit Top Pair or better
QQ+ AQs
12----2----total 14
14/38=36.8% of the time.